All Articles IPA CLC Genomics Server CLC Genomics Workbench HGMD



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Can I run a local BLAST search against multiple blast databases simultaneously?


How do I change the memory limit for the CLC Workbench or Server java process?


QIAGEN CLC Genomics Workbench 

Can I search BLAST databases made using Create BLAST Databases with BLAST+ software?


QIAGEN CLC Genomics Workbench 

Error message "Please ensure that the Workbench and Server are compatible"


QIAGEN CLC Genomics Workbench 

How do I log into a CLC Genomics Server from my Workbench?


QIAGEN CLC Genomics Server

How can I trim and assemble my forward and reverse Sanger sequence for each sample in batch using QIAGEN CLC Genomics Workbench?


QIAGEN CLC Genomics Workbench 

License Errors: What does "The server does not have a license for this product" mean?


How can I find out which machine my license has been downloaded for?


Which computer is using the licenses for the CLC software

How are mappings to circular references handled when exporting to or importing from SAM/BAM files?


QIAGEN CLC Genomics Workbench 

Why has Download Genome failed in the CLC Genomics Workbench?


QIAGEN CLC Genomics Workbench  | This FAQ includes different reasons why the Download Genome tool may fail in the Genomics Workbench and guidelines on how to resolve the issue

How can I evaluate the software and how long is the evaluation period?


QIAGEN CLC Genomics Workbench  | Information about free evaluation licenses for the CLC Workbenches

How can I import NGS reads from a BAM or SAM file as a read list?


QIAGEN CLC Genomics Workbench 

How can I submit a feature request?


QIAGEN CLC Genomics Workbench  | Describes how to find out if a particular feature is already available in the Workbench and how to submit a feature request

Why are my local BLAST searches taking so long?


QIAGEN CLC Genomics Workbench 

How can I create a Metadata Table for my RNA-Seq experiment?


QIAGEN CLC Genomics Workbench 

Why does the progress bar report 0% when running a local blast search?


QIAGEN CLC Genomics Workbench 

How to trim 16S rRNA primers of paired Illumina reads?


QIAGEN CLC Genomics Workbench 

How to trim adapters from miRNA data sequenced on Illumina machine?


QIAGEN CLC Genomics Workbench 

How can I find the location and orientation of my primers or adapters in the reads?


QIAGEN CLC Genomics Workbench 

How to import predesigned primers to a CLC Workbench?


QIAGEN CLC Genomics Workbench 

Why do the CLC Workbenches not import the full chromatogram from AB1 or ABI files?


QIAGEN CLC Genomics Workbench 

How can I create a heat map for a specific list of genes?


QIAGEN CLC Genomics Workbench 

Which steps should I follow to perform a resequencing analysis in the CLC Genomics Workbench?


QIAGEN CLC Genomics Workbench 

Why is the progress bar stalled/why is the progress bar at 100% but my job is still running?


QIAGEN CLC Genomics Workbench 

How do I save and apply customized View Settings?


QIAGEN CLC Genomics Workbench 

What do the navigation area icons mean?


QIAGEN CLC Genomics Workbench  | The icons in the navigation area signifies specific data object types. This FAQ list the icons and there meaning.

Why do I get the error message "Inconsistent input: The provided metadata does not describe the input data." in the Differential Expression for RNA-Seq wizard?


QIAGEN CLC Genomics Workbench 

Am I eligible for support for my CLC software?


How can I change the order of groups being compared in the Differential Expression for RNA-seq tool?


QIAGEN CLC Genomics Workbench 

What do Ns represent in the output of my de novo assembly?


How to extract BLAST hit regions?


How to add flanking sequence to variants in the CLC Genomics Workbench?


How can I identify differential expression between groups affected by more than one factor?


QIAGEN CLC Genomics Workbench 

How can I view the bases for mapped reads that extend beyond the end of a reference sequence?


Why are BLAST searches submitted from a CLC Workbench to NCBI taking so long?


QIAGEN CLC Genomics Workbench 

Where can I get installer files for QIAGEN CLC software?


QIAGEN CLC Genomics Workbench 

How much memory does a de novo assembly take?


How to add additional information from the annotation tracks to my RNA-Seq results?


How to save the decorations on a phylogenetic tree?


Why do I get p-values of zero from Differential Expression Analysis?


How do I remove contaminant reads from my read list?


Should I use a masked reference when working with exome or amplicon data?


This FAQ provide background information regarding why it is often not appropriate to use a masked reference for mapping

How can I identify low or zero coverage regions in a mapping?


How can contig coverage be included in exported fasta headers?


This FAQ page addresses how you can export a fasta file that includes coverage information along with the sequence name. This is a common requirement for downstream applications such as RAST or MT-RAST.

Why are there ambiguity codes and N's in the paired reads of my mapping?


Why is the total memory used for my read mapping more than specified as the maximum for the java process?


What is the difference between Tracks and Stand-alone objects?


How can I change the decimal notation used by the Workbench


Why are my sequences shown as "No label" in the navigation area of the Workbench?


Can sequences downloaded from NCBI be used as a track-based reference?


Can I use the De Novo Assembly tool for my transcriptomic data?


How can I do a Hybrid Assembly of Long and Short Reads?


How do I mark a sequence as circular or linear?


How can I check that a set of tracks are compatible?


Why are no BLAST databases listed in the Download BLAST Databases window?


QIAGEN CLC Genomics Workbench  | This FAQ describes the reason why you may not see any BLAST databases in the Download BLAST Databases window and workarounds to obtain the databases

How can I get amino acid prediction information for the variants in my data?


QIAGEN CLC Genomics Workbench  | Described the different way of prediction amino acid changes when working with Stand-alone objects or Tracks

What does the error CPU usage limit exceeded mean when I run a search at the NCBI?


QIAGEN CLC Genomics Workbench 

Should I run my assembly in stages?


QIAGEN CLC Genomics Workbench  | This FAQ described why including all data in one de novo assembly is recommended.

Why do I get contigs shorter than the minimum contig length I specified?


QIAGEN CLC Genomics Workbench